assaybench

v0.1.0 suspicious
5.0
Medium Risk

AssayBench: a gene ranking benchmark for evaluating LLMs on biological assay data

⚠ Tarball exceeded 25 MB β€” source code analysis was limited to package metadata only.

πŸ€– AI Analysis

Final verdict: SUSPICIOUS

The package has low risks in terms of network usage, shell execution, and obfuscation, but the metadata suggests potential issues with maintenance and effort level, raising suspicion.

  • Low network risk
  • Low shell risk
  • Low obfuscation risk
  • Low credential risk
  • Potential low maintenance indicating suspicious activity
Per-check LLM notes
  • Network: No network calls detected, which is normal unless the package requires internet access for its functionality.
  • Shell: No shell execution patterns detected, indicating low risk of command injection or system exploitation.
  • Obfuscation: No obfuscation patterns detected, indicating low risk of malicious obfuscation.
  • Credentials: No credential harvesting patterns detected, indicating low risk of malicious credential theft.
  • Metadata: The package shows signs of low maintenance and could potentially be a low-effort attempt at malicious activity.

πŸ“¦ Package Quality Overall: Low (2.0/10)

β—‹ Low Test Suite 1.0

No test suite detected

  • No test files or test-runner configuration detected
β—ˆ Medium Documentation 5.0

Some documentation present

  • Detailed PyPI description (9995 chars)
β—‹ Low Contributing Guide 2.0

No contributing guide or governance files found

  • No CONTRIBUTING, CODE_OF_CONDUCT, or governance files found
β—‹ Low Type Annotations 1.0

No type annotations detected

  • No type annotations, py.typed marker, or stub files detected
β—‹ Low Multiple Contributors 1.0

Unable to verify contributor count: no GitHub repository found

  • No GitHub repository linked β€” contributor count unavailable

πŸ”¬ Heuristic Checks

βœ“ Outbound Network Calls

No suspicious network call patterns found

βœ“ Code Obfuscation

No obfuscation patterns detected

βœ“ Shell / Subprocess Execution

No shell execution patterns detected

βœ“ Credential Harvesting

No credential harvesting patterns detected

βœ“ Typosquatting

No typosquatting candidates detected

βœ“ Registered Email Domain

Email domain looks legitimate: gene.com>

βœ“ Suspicious Page Links

All external links appear legitimate

βœ“ Git Repository History

No GitHub repository linked

  • No GitHub repository link found
⚠ Maintainer History score 8.0

4 maintainer concern(s) found

  • Only one version has ever been released β€” brand new package
  • Author name is missing or very short
  • Author "" appears to have only 1 package on PyPI (new or inactive account)
  • Package has no PyPI classifiers (low effort / metadata quality)
βœ“ Known CVE Vulnerabilities

No known vulnerabilities found in OSV database.

πŸ’‘ AI App Starter Prompt

Use this prompt to build a project with assaybench
Create a mini-application named 'BioRanker' that leverages the 'assaybench' Python package to rank genes based on their relevance in biological assays. The application should allow users to input gene expression data from various biological assays and then use AssayBench's evaluation metrics to rank these genes according to their importance. Here’s a detailed breakdown of the steps and features you need to implement:

1. **Setup**: Begin by installing the 'assaybench' package using pip. Ensure all necessary dependencies are also installed.
2. **Data Input Interface**: Develop a user-friendly interface where users can upload their gene expression datasets. These datasets should be in CSV format, containing columns for gene names and expression levels across different samples.
3. **Preprocessing Module**: Implement a preprocessing module that cleans and normalizes the uploaded data. This includes handling missing values, scaling expression levels, and converting gene names to standardized identifiers if necessary.
4. **Gene Ranking Algorithm**: Utilize 'assaybench' to apply its built-in algorithms for gene ranking. These algorithms should consider multiple factors such as differential expression, pathway enrichment, and functional annotations to provide a comprehensive ranking.
5. **Visualization Tool**: Create interactive visualizations to display the ranked genes. Include bar charts showing top-ranked genes, heatmaps illustrating expression patterns, and network graphs depicting interactions between genes.
6. **Evaluation Metrics**: Integrate 'assaybench's evaluation metrics to assess the performance of the ranking algorithms. Provide users with detailed reports on precision, recall, F1-score, and other relevant metrics.
7. **Export Results**: Allow users to export the ranked gene list and evaluation metrics in various formats such as CSV, Excel, or PDF for further analysis or reporting.
8. **Documentation & Help**: Finally, ensure your application comes with comprehensive documentation and a help section that guides users through each step of the process, explaining how 'assaybench' enhances gene ranking accuracy and reliability.

πŸ’¬ Discussion Feed

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