annslicer

v0.2.1 suspicious
5.0
Medium Risk

Out-of-core sharding of large .h5ad AnnData files with minimal memory usage.

🤖 AI Analysis

Final verdict: SUSPICIOUS

The package presents a moderate risk due to the maintainer's single package and missing repository, despite showing no signs of obfuscation or credential harvesting.

  • Maintainer has only one package
  • Repository not found
Per-check LLM notes
  • Obfuscation: No obfuscation patterns detected, indicating low risk.
  • Credentials: No credential harvesting patterns detected, indicating low risk.
  • Metadata: The repository is not found and the maintainer has only one package, which could indicate suspicious activity.

📦 Package Quality Overall: Low (4.4/10)

✦ High Test Suite 9.0

Test suite present — 4 test file(s) found

  • Test runner config found: conftest.py
  • Test runner config found: pyproject.toml
  • 4 test file(s) detected (e.g. conftest.py)
◈ Medium Documentation 5.0

Some documentation present

  • Detailed PyPI description (13214 chars)
○ Low Contributing Guide 2.0

No contributing guide or governance files found

  • No CONTRIBUTING, CODE_OF_CONDUCT, or governance files found
◈ Medium Type Annotations 5.0

Partial type annotation coverage

  • 82 type-annotated function signatures detected in source
○ Low Multiple Contributors 1.0

Could not retrieve contributor data from GitHub

  • GitHub API error: 404

🔬 Heuristic Checks

Outbound Network Calls

No suspicious network call patterns found

Code Obfuscation

No obfuscation patterns detected

Shell / Subprocess Execution

No shell execution patterns detected

Credential Harvesting

No credential harvesting patterns detected

Typosquatting

No typosquatting candidates detected

Registered Email Domain

No author email provided

Suspicious Page Links

All external links appear legitimate

Git Repository History score 3.0

Repository not found (deleted or private)

  • Repository not found (deleted or private)
Maintainer History score 2.0

1 maintainer concern(s) found

  • Author "sfleming" appears to have only 1 package on PyPI (new or inactive account)
Known CVE Vulnerabilities

No known vulnerabilities found in OSV database.

💡 AI App Starter Prompt

Use this prompt to build a project with annslicer
Create a utility named 'AnnDataShardMaster' that simplifies the process of managing large-scale biological datasets stored in .h5ad AnnData files using the 'annslicer' package. This utility will enable researchers to efficiently slice and shard their data into smaller, manageable parts without consuming excessive memory resources. The application should include the following key functionalities:

1. **Data Sharding**: Implement a feature that allows users to input a path to a large .h5ad file and specify the desired size of each shard. The utility should then automatically split the dataset into multiple smaller files based on the specified shard size.
2. **Out-of-Core Processing**: Ensure that the utility leverages 'annslicer' to perform out-of-core operations, meaning it can handle datasets larger than the available RAM. Users should be able to process these shards sequentially or concurrently as needed.
3. **Memory Management**: Integrate monitoring tools within the utility to track memory usage during the sharding process. This helps in understanding the efficiency of 'annslicer' in minimizing memory consumption.
4. **Interactive Interface**: Develop a simple command-line interface (CLI) where users can interact with the utility, providing inputs like file paths, shard sizes, and processing options.
5. **Documentation and Examples**: Provide comprehensive documentation along with sample datasets and use cases to help new users understand how to utilize 'AnnDataShardMaster'.

To achieve these objectives, make sure to utilize the core functionalities of the 'annslicer' package such as its ability to efficiently manage large datasets and perform operations without loading entire datasets into memory. Additionally, consider adding advanced features like automatic compression of shards, support for parallel processing, and error handling mechanisms to enhance the robustness of the utility.

💬 Discussion Feed

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