TprParser

v0.1.66 safe
4.0
Medium Risk

A reader of gromacs tpr file

πŸ€– AI Analysis

Final verdict: SAFE

The package shows no signs of malicious behavior such as network calls, shell executions, or obfuscation. However, the maintainer's limited history with publishing packages suggests some caution.

  • No network calls or shell executions
  • Single package from maintainer
Per-check LLM notes
  • Network: No network calls detected, which is normal if the package does not require internet access.
  • Shell: No shell execution patterns detected, indicating the package likely does not execute external commands.
  • Obfuscation: No obfuscation patterns detected, indicating low risk of malicious obfuscation.
  • Credentials: No credential harvesting patterns detected, indicating low risk of secret or credential theft.
  • Metadata: The maintainer has only one package, indicating potential newness or inactivity which warrants caution but does not strongly indicate malice.

πŸ”¬ Heuristic Checks

βœ“ Outbound Network Calls

No suspicious network call patterns found

βœ“ Code Obfuscation

No obfuscation patterns detected

βœ“ Shell / Subprocess Execution

No shell execution patterns detected

βœ“ Credential Harvesting

No credential harvesting patterns detected

βœ“ Typosquatting

No typosquatting candidates detected

βœ“ Registered Email Domain

No author email provided

βœ“ Suspicious Page Links

All external links appear legitimate

βœ“ Git Repository History

No GitHub repository linked

  • No GitHub repository link found
⚠ Maintainer History score 2.0

1 maintainer concern(s) found

  • Author "Yujie Liu" appears to have only 1 package on PyPI (new or inactive account)
βœ“ Known CVE Vulnerabilities

No known vulnerabilities found in OSV database.

πŸ’‘ AI App Starter Prompt

Use this prompt to build a project with TprParser
Create a fully-functional mini-application named 'TPRVisualizer' using the Python package 'TprParser'. This application should serve as a tool for molecular dynamics researchers to visualize and analyze data from GROMACS tpr files. Here’s a step-by-step guide on how to build it:

1. **Project Setup**: Start by setting up a new Python environment and installing necessary packages including TprParser. Ensure you have a clean virtual environment for your project.

2. **Main Functionality**: Implement the core functionality that reads a tpr file using TprParser. The app should display basic information about the system such as number of atoms, box dimensions, temperature, pressure, etc.

3. **Data Visualization**: Integrate matplotlib or seaborn for plotting purposes. Allow users to visualize different aspects of their molecular systems, like atom positions over time if trajectory data is available, or distribution of specific atoms.

4. **Interactive Features**: Develop an interactive interface where users can input parameters for analysis, such as selecting specific atoms or time frames for visualization.

5. **Advanced Analysis Tools**: Include additional tools within the app for more detailed analysis. For instance, calculating the radius of gyration or RMSD could provide deeper insights into the molecular dynamics.

6. **Saving Outputs**: Provide options for saving visualizations and analysis results. Users should be able to export plots and data summaries in common formats like PNG or CSV.

7. **Documentation & User Guide**: Write comprehensive documentation explaining how to use TPRVisualizer, including installation instructions, usage examples, and tips for advanced users.

8. **Testing & Validation**: Ensure thorough testing of all functionalities. Use example tpr files provided by GROMACS to validate the accuracy of your app's outputs.

Remember to utilize TprParser effectively throughout the development process to handle the complexities of reading and interpreting tpr files. Your goal is to create a user-friendly, powerful tool that enhances the workflow of molecular dynamics researchers.